PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf02263g04007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20365.2 Da    PI: 7.8334
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf02263g04007.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.3e-101662248
                              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                              +ie + n ++tfskRr  + K A+ L +  ++++ +i+fs+++k + 
  Peinf101Scf02263g04007.1 16 KIEKEENLYTTFSKRRSSLYKTASDLAIQFNIDIGIILFSPKNKPFS 62
                              599999************************************98655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-13766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.666767IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-18878IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-8929IPR002100Transcription factor, MADS-box
PfamPF003198.2E-161663IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEVKMTRGRQ KIPMVKIEKE ENLYTTFSKR RSSLYKTASD LAIQFNIDIG IILFSPKNKP  60
FSFVHPTVEA VIDRFLDPHA QLSEGTRLVA AHVHNNVNEL NRKSKELDKI EETTNKEALE  120
YEKMKEIGPK GWWESIEQLD EDAITKFEAW LKATAFTIDR RLNQLKNEAS TSTQPL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474013.12e-69PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLM1DMK57e-57M1DMK5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000914282e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38220138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-26AGAMOUS-like 62